Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 50639799
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.64%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 127
N50 Contigs 292,189 bp
Longest Contig 528,692 bp
Scaffold Count 127
N50 Scaffolds 292,189 bp
Longest Scaffold 528,692 bp
Genome Size 5,344,612 bp
Protein Count 5,121
Coding Density 88.01%
GC Percentage 50.47%
Ambiguous Bases 2
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM146320v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04158299
Country Norway
Date 2015-12-09
Genbank Assembly Accession GCA_001463205.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine
Latitude Longitude None
Molecule Count N/A
CDS Count 5,306
Refseq Category na
Seq Rel Date 2015/12/09
Spanned Gaps 0
Species Taxid 562
SSU Count 3
Submitter Norwegian National Advisory Unit on Detection of Antimicrobial Resistance
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNHQ00000000.1