Pauljensenia odontolytica_C
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Actinomycetaceae; g__Pauljensenia; s__Pauljensenia odontolytica_C
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Schaalia; s__Schaalia odontolytica
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Schaalia; s__Schaalia odontolytica
NCBI Strain Identifiers XH001
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_005696695.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.47%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 6
N50 Contigs 576,468 bp
Longest Contig 1,166,187 bp
Scaffold Count 5
N50 Scaffolds 576,468 bp
Longest Scaffold 1,166,187 bp
Genome Size 2,336,123 bp
Protein Count 1,978
Coding Density 89.41%
GC Percentage 65.94%
Ambiguous Bases N/A
GTDB representative GCA_005696695.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM146237v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04166493
Country USA: Los Angeles
Date 2015-12-08
Genbank Assembly Accession GCA_001462375.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source oral cavity
Latitude Longitude None
Molecule Count N/A
CDS Count 2,014
Refseq Category na
Seq Rel Date 2015/12/08
Spanned Gaps 1
Species Taxid 1660
SSU Count 1
Submitter University of Washington
Taxid 1660
Total Gap Length 100
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLVT00000000.1