Tropicibacter naphthalenivorans
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Tropicibacter; s__Tropicibacter naphthalenivorans
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Tropicibacter; s__Tropicibacter naphthalenivorans
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Tropicibacter; s__Tropicibacter naphthalenivorans
NCBI Strain Identifiers CECT 7648
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_900176475.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.55%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 34
N50 Contigs 393,851 bp
Longest Contig 774,627 bp
Scaffold Count 33
N50 Scaffolds 742,329 bp
Longest Scaffold 897,227 bp
Genome Size 4,459,382 bp
Protein Count 4,225
Coding Density 90.70%
GC Percentage 63.18%
Ambiguous Bases N/A
GTDB representative GCA_900176475.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Tr.naphthalenivorans_CECT7648_Spades_Prokka
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3532112
Country None
Date 2015-11-9
Genbank Assembly Accession GCA_001458375.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sea water from Semarang Port; Java
Latitude Longitude None
Molecule Count N/A
CDS Count 4,167
Refseq Category na
Seq Rel Date 2015/11/09
Spanned Gaps 1
Species Taxid 441103
SSU Count 1
Submitter UVEG
Taxid 441103
Total Gap Length 192
Translation Table 11
tRNA Count (total) 42
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CYSE00000000.1