Thalassobacter stenotrophicus
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Thalassobacter; s__Thalassobacter stenotrophicus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Thalassobacter; s__Thalassobacter stenotrophicus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Thalassobacter; s__Thalassobacter stenotrophicus
NCBI Strain Identifiers CECT 5294
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (5 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.33%
CheckM Contamination 1.06%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 33
N50 Contigs 325,098 bp
Longest Contig 682,620 bp
Scaffold Count 33
N50 Scaffolds 325,098 bp
Longest Scaffold 682,620 bp
Genome Size 3,592,055 bp
Protein Count 3,597
Coding Density 91.63%
GC Percentage 58.64%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name T.stenotrophicusCECT5294_Spades_Prokka
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3529277
Country None
Date 2015-11-9
Genbank Assembly Accession GCA_001458315.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source 2-3 km off coast sea water; Valencia
Latitude Longitude None
Molecule Count N/A
CDS Count 3,549
Refseq Category representative genome
Seq Rel Date 2015/11/09
Spanned Gaps 0
Species Taxid 266809
SSU Count 1
Submitter UVEG
Taxid 266809
Total Gap Length 0
Translation Table 11
tRNA Count (total) 41
Type Material assembly from synonym type material
Unspanned Gaps 0
Version Status latest
WGS Master CYRX00000000.1