Ruegeria denitrificans
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Ruegeria; s__Ruegeria denitrificans
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Ruegeria; s__Ruegeria denitrificans
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Ruegeria; s__Ruegeria denitrificans
NCBI Strain Identifiers CECT 5091
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.79%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 42
N50 Contigs 290,832 bp
Longest Contig 582,879 bp
Scaffold Count 42
N50 Scaffolds 290,832 bp
Longest Scaffold 582,879 bp
Genome Size 4,620,120 bp
Protein Count 4,558
Coding Density 89.58%
GC Percentage 56.73%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name Ruegeria_sp._CECT5091_Spades_Prokka
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3542132
Country None
Date 2015-11-09
Genbank Assembly Accession GCA_001458295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source oysters; cultured off Spanish Mediterranean coast; Vinaroz
Latitude Longitude None
Molecule Count N/A
CDS Count 4,445
Refseq Category na
Seq Rel Date 2015/11/09
Spanned Gaps 0
Species Taxid 1715692
SSU Count 1
Submitter UVEG
Taxid 1715692
Total Gap Length 0
Translation Table 11
tRNA Count (total) 44
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master CYUD00000000.1