Thalassobius autumnalis
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Thalassobius; s__Thalassobius autumnalis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Thalassobius; s__Thalassobius autumnalis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Thalassobius; s__Thalassobius autumnalis
NCBI Strain Identifiers CECT 5120
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001458255.1)
Genome Characteristics
CheckM Completeness 98.94%
CheckM Contamination 0.06%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 2
23S Count 3
tRNA Count 19
Contig Count 47
N50 Contigs 195,645 bp
Longest Contig 379,585 bp
Scaffold Count 47
N50 Scaffolds 195,645 bp
Longest Scaffold 379,585 bp
Genome Size 4,426,121 bp
Protein Count 4,285
Coding Density 90.07%
GC Percentage 59.77%
Ambiguous Bases 9
GTDB representative GCA_001458255.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name T.mediterraneus_CECT5120_Seqman_Prokka
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3531501
Country None
Date 2015-11-09
Genbank Assembly Accession GCA_001458275.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source water surrounding cultivated oysters; Vinaroz
Latitude Longitude None
Molecule Count N/A
CDS Count 4,241
Refseq Category na
Seq Rel Date 2015/11/09
Spanned Gaps 0
Species Taxid 2072972
SSU Count 2
Submitter UVEG
Taxid 2072972
Total Gap Length 0
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CYSC00000000.1