Thalassobius autumnalis
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Thalassobius; s__Thalassobius autumnalis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Thalassobius; s__Thalassobius autumnalis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Thalassobius; s__Thalassobius autumnalis
NCBI Strain Identifiers CECT 5118
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.94%
CheckM Contamination 0.06%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 49
N50 Contigs 239,874 bp
Longest Contig 427,244 bp
Scaffold Count 48
N50 Scaffolds 239,874 bp
Longest Scaffold 427,244 bp
Genome Size 4,359,147 bp
Protein Count 4,160
Coding Density 90.15%
GC Percentage 59.79%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Tmediterraneus_CECT5118_Spades_Prokka
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3531082
Country None
Date 2015-11-09
Genbank Assembly Accession GCA_001458255.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source water surrounding cultivated oysters; Vinaroz
Latitude Longitude None
Molecule Count N/A
CDS Count 4,115
Refseq Category na
Seq Rel Date 2015/11/09
Spanned Gaps 1
Species Taxid 2072972
SSU Count 1
Submitter UVEG
Taxid 2072972
Total Gap Length 65
Translation Table 11
tRNA Count (total) 53
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master CYSB00000000.1