Ruegeria atlantica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Ruegeria; s__Ruegeria atlantica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Ruegeria; s__Ruegeria atlantica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Ruegeria; s__Ruegeria atlantica
NCBI Strain Identifiers CECT 4292
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.57%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 1
tRNA Count 19
Contig Count 75
N50 Contigs 180,450 bp
Longest Contig 883,878 bp
Scaffold Count 75
N50 Scaffolds 180,450 bp
Longest Scaffold 883,878 bp
Genome Size 4,816,147 bp
Protein Count 4,808
Coding Density 89.30%
GC Percentage 56.38%
Ambiguous Bases 11
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name R.atlanticaCECT4292_SeqMan_Prokka
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3528420
Country None
Date 2015-11-7
Genbank Assembly Accession GCA_001458195.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source marine sediment from Northwestern African Upwelling Area
Latitude Longitude None
Molecule Count N/A
CDS Count 4,712
Refseq Category representative genome
Seq Rel Date 2015/11/07
Spanned Gaps 0
Species Taxid 81569
SSU Count 2
Submitter UVEG
Taxid 81569
Total Gap Length 0
Translation Table 11
tRNA Count (total) 48
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master CYPU00000000.1