Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Shimia; s__Shimia marina
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Shimia; s__Shimia marina
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Shimia; s__Shimia marina
NCBI Strain Identifiers CECT 7688
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 97.71%
CheckM Contamination 0.8%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 77
N50 Contigs 132,144 bp
Longest Contig 302,085 bp
Scaffold Count 45
N50 Scaffolds 325,104 bp
Longest Scaffold 768,102 bp
Genome Size 4,001,860 bp
Protein Count 3,896
Coding Density 89.81%
GC Percentage 57.36%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name S.marinaCECT7688_Velvet_Prokka
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3528422
Country None
Date 2015-11-7
Genbank Assembly Accession GCA_001458175.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Biofilm on an acrylic slide in a coastal fish farm
Latitude Longitude None
Molecule Count N/A
CDS Count 3,825
Refseq Category representative genome
Seq Rel Date 2015/11/07
Spanned Gaps 32
Species Taxid 321267
SSU Count 1
Submitter UVEG
Taxid 321267
Total Gap Length 3899
Translation Table 11
tRNA Count (total) 44
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master CYPW00000000.1