Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis variant bovis; x__Mycobacterium tuberculosis variant bovis BCG
NCBI Strain Identifiers S4
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.78%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 131
N50 Contigs 64,728 bp
Longest Contig 175,416 bp
Scaffold Count 131
N50 Scaffolds 64,728 bp
Longest Scaffold 175,416 bp
Genome Size 4,245,792 bp
Protein Count 4,027
Coding Density 90.37%
GC Percentage 65.58%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name S4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3539300
Country None
Date 2015-11-07
Genbank Assembly Accession GCA_001458155.1
Genome Category Isolate
Genome Representation full
Isolate S4
Isolation Source tissue
Latitude Longitude None
Molecule Count N/A
CDS Count 4,193
Refseq Category na
Seq Rel Date 2015/11/07
Spanned Gaps 0
Species Taxid 1773
SSU Count 1
Submitter CEBITEC
Taxid 33892
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CYST00000000.1