Ruegeria atlantica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Ruegeria; s__Ruegeria atlantica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Ruegeria; s__Ruegeria atlantica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Ruegeria; s__Ruegeria atlantica
NCBI Strain Identifiers CECT 4293
GTDB Type Material Designation type strain of heterotypic synonym
GTDB Representative of Species False (representative is GCA_001458195.1)
Genome Characteristics
CheckM Completeness 99.25%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 3
23S Count 3
tRNA Count 19
Contig Count 67
N50 Contigs 378,295 bp
Longest Contig 585,384 bp
Scaffold Count 67
N50 Scaffolds 378,295 bp
Longest Scaffold 585,384 bp
Genome Size 4,825,935 bp
Protein Count 4,757
Coding Density 89.54%
GC Percentage 56.48%
Ambiguous Bases 7
GTDB representative GCA_001458195.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name R.atlanticaCECT4293_SeqMan_Prokka
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3522225
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001458095.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source marine sediment
Latitude Longitude None
Molecule Count N/A
CDS Count 4,663
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 0
Species Taxid 81569
SSU Count 3
Submitter UVEG
Taxid 81569
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CYPS00000000.1