Salmonella enterica
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium
NCBI Strain Identifiers ST221_31B
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 3
tRNA Count 18
Contig Count 72
N50 Contigs 181,326 bp
Longest Contig 707,665 bp
Scaffold Count 72
N50 Scaffolds 181,326 bp
Longest Scaffold 707,665 bp
Genome Size 4,989,491 bp
Protein Count 4,760
Coding Density 87.75%
GC Percentage 52.09%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM145736v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03247169
Country None
Date 2015-12-4
Genbank Assembly Accession GCA_001457365.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source chicken whole broiler carcass
Latitude Longitude None
Molecule Count N/A
CDS Count 5,081
Refseq Category na
Seq Rel Date 2015/12/04
Spanned Gaps 0
Species Taxid 28901
SSU Count 2
Submitter USFDA
Taxid 90371
Total Gap Length 0
Translation Table 11
tRNA Count (total) 74
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JUIT00000000.1