Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Rhodococcus; s__Rhodococcus qingshengii
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__Rhodococcus enclensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__Rhodococcus enclensis
NCBI Strain Identifiers NIO-1009
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_001646745.1)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.94%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 0
23S Count 0
tRNA Count 20
Contig Count 78
N50 Contigs 319,592 bp
Longest Contig 617,898 bp
Scaffold Count 76
N50 Scaffolds 320,733 bp
Longest Scaffold 860,926 bp
Genome Size 7,478,744 bp
Protein Count 7,186
Coding Density 90.41%
GC Percentage 62.31%
Ambiguous Bases N/A
GTDB representative GCA_001646745.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM145696v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04263893
Country India: Chora Island
Date 2015-12-4
Genbank Assembly Accession GCA_001456965.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source marine sediment
Latitude Longitude None
Molecule Count N/A
CDS Count 7,041
Refseq Category na
Seq Rel Date 2015/12/04
Spanned Gaps 2
Species Taxid 1049584
SSU Count 1
Submitter CSIR-National Chemical Laboratory
Taxid 1049584
Total Gap Length 1471
Translation Table 11
tRNA Count (total) 53
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LNQH00000000.1