Lactococcus lactis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Lactococcus; s__Lactococcus lactis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Lactococcus; s__Lactococcus lactis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Lactococcus; s__Lactococcus lactis; sb__Lactococcus lactis subsp. lactis
NCBI Strain Identifiers UC317
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900099625.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.95%
CheckM Strain Heterogeneity 75.0
5S Count 4
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 213
N50 Contigs 51,401 bp
Longest Contig 162,455 bp
Scaffold Count 213
N50 Scaffolds 51,401 bp
Longest Scaffold 162,455 bp
Genome Size 2,498,421 bp
Protein Count 2,587
Coding Density 86.25%
GC Percentage 35.01%
Ambiguous Bases N/A
GTDB representative GCA_900099625.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM145685v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04026655
Country Netherlands
Date 2015-12-4
Genbank Assembly Accession GCA_001456855.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Dairy starter
Latitude Longitude None
Molecule Count N/A
CDS Count 2,569
Refseq Category na
Seq Rel Date 2015/12/04
Spanned Gaps 0
Species Taxid 1358
SSU Count 1
Submitter Radboudumc
Taxid 1360
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKLY00000000.1