Photobacterium kishitanii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Photobacterium; s__Photobacterium kishitanii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Photobacterium; s__Photobacterium kishitanii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Photobacterium; s__Photobacterium kishitanii
NCBI Strain Identifiers 201212X
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003026355.1)
Genome Characteristics
CheckM Completeness 97.62%
CheckM Contamination 1.52%
CheckM Strain Heterogeneity 6.67
5S Count 16
16S Count 3
23S Count 11
tRNA Count 20
Contig Count 115
N50 Contigs 290,581 bp
Longest Contig 640,382 bp
Scaffold Count 115
N50 Scaffolds 290,581 bp
Longest Scaffold 640,382 bp
Genome Size 5,000,359 bp
Protein Count 4,391
Coding Density 84.38%
GC Percentage 38.79%
Ambiguous Bases N/A
GTDB representative GCA_003026355.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM145589v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04277301
Country Japan: Southern Kyushuu
Date 2015-12-3
Genbank Assembly Accession GCA_001455895.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,340
Refseq Category na
Seq Rel Date 2015/12/03
Spanned Gaps 0
Species Taxid 318456
SSU Count 18
Submitter University of Cambridge
Taxid 318456
Total Gap Length 0
Translation Table 11
tRNA Count (total) 189
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNTE00000000.1