Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis variant bovis
NCBI Strain Identifiers B-3222
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.78%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 56
N50 Contigs 144,100 bp
Longest Contig 395,083 bp
Scaffold Count 56
N50 Scaffolds 144,100 bp
Longest Scaffold 395,083 bp
Genome Size 4,299,850 bp
Protein Count 4,031
Coding Density 90.24%
GC Percentage 65.56%
Ambiguous Bases 1
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM145516v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04241384
Country South Korea: Hongseong
Date 2015-12-02
Genbank Assembly Accession GCA_001455165.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Laryngopharyngeal lymph node
Latitude Longitude 36.6009642 N 126.52161180000007 E
Molecule Count N/A
CDS Count 4,218
Refseq Category na
Seq Rel Date 2015/12/02
Spanned Gaps 0
Species Taxid 1773
SSU Count 1
Submitter Animal and Plant Qarantine Agency
Taxid 1765
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNOF00000000.1