Pseudomonas aeruginosa_A
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa_A
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers WH-SGI-V-07287
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000017205.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.28%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 61
N50 Contigs 471,594 bp
Longest Contig 953,010 bp
Scaffold Count 61
N50 Scaffolds 471,594 bp
Longest Scaffold 953,010 bp
Genome Size 6,461,457 bp
Protein Count 5,949
Coding Density 89.38%
GC Percentage 66.58%
Ambiguous Bases N/A
GTDB representative GCA_000017205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name WH-SGI-V-07287
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04128729
Country Puerto Rico
Date 2015-11-30
Genbank Assembly Accession GCA_001454675.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Tree
Latitude Longitude None
Molecule Count N/A
CDS Count 6,083
Refseq Category na
Seq Rel Date 2015/11/30
Spanned Gaps 0
Species Taxid 287
SSU Count 1
Submitter Synthetic Genomics Vaccines, Inc.
Taxid 287
Total Gap Length 0
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLUM00000000.1