Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers WH-SGI-V-07322
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.03%
CheckM Contamination 0.25%
CheckM Strain Heterogeneity 0.0
5S Count 11
16S Count 1
23S Count 3
tRNA Count 19
Contig Count 150
N50 Contigs 215,393 bp
Longest Contig 662,921 bp
Scaffold Count 149
N50 Scaffolds 215,393 bp
Longest Scaffold 662,921 bp
Genome Size 7,180,914 bp
Protein Count 6,790
Coding Density 88.97%
GC Percentage 65.62%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name WH-SGI-V-07322
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04128751
Country Colombia
Date 2015-11-30
Genbank Assembly Accession GCA_001454445.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 6,992
Refseq Category na
Seq Rel Date 2015/11/30
Spanned Gaps 1
Species Taxid 287
SSU Count 1
Submitter Synthetic Genomics Vaccines, Inc.
Taxid 287
Total Gap Length 58
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLVI00000000.1