Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers WH-SGI-V-07314
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 42
N50 Contigs 530,036 bp
Longest Contig 1,400,117 bp
Scaffold Count 41
N50 Scaffolds 530,036 bp
Longest Scaffold 1,400,117 bp
Genome Size 6,355,610 bp
Protein Count 5,810
Coding Density 89.85%
GC Percentage 66.57%
Ambiguous Bases 3
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name WH-SGI-V-07314
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04128746
Country Tunisia
Date 2015-11-30
Genbank Assembly Accession GCA_001454385.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Asite
Latitude Longitude None
Molecule Count N/A
CDS Count 5,949
Refseq Category na
Seq Rel Date 2015/11/30
Spanned Gaps 1
Species Taxid 287
SSU Count 1
Submitter Synthetic Genomics Vaccines, Inc.
Taxid 287
Total Gap Length 116
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLVD00000000.1