Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers WH-SGI-V-07266
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 81
N50 Contigs 334,470 bp
Longest Contig 843,081 bp
Scaffold Count 78
N50 Scaffolds 350,982 bp
Longest Scaffold 843,081 bp
Genome Size 6,377,586 bp
Protein Count 5,869
Coding Density 89.70%
GC Percentage 66.43%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name WH-SGI-V-07266
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04128714
Country Belgium
Date 2015-11-30
Genbank Assembly Accession GCA_001453985.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Throat
Latitude Longitude None
Molecule Count N/A
CDS Count 5,994
Refseq Category na
Seq Rel Date 2015/11/30
Spanned Gaps 3
Species Taxid 287
SSU Count 1
Submitter Synthetic Genomics Vaccines, Inc.
Taxid 287
Total Gap Length 141
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLTX00000000.1