Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers WH-SGI-V-07279
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.13%
CheckM Strain Heterogeneity 50.0
5S Count 7
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 49
N50 Contigs 351,748 bp
Longest Contig 832,440 bp
Scaffold Count 46
N50 Scaffolds 457,647 bp
Longest Scaffold 936,132 bp
Genome Size 6,422,016 bp
Protein Count 5,889
Coding Density 89.90%
GC Percentage 66.46%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name WH-SGI-V-07279
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04128722
Country Portugal
Date 2015-11-30
Genbank Assembly Accession GCA_001453945.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source CF
Latitude Longitude None
Molecule Count N/A
CDS Count 6,037
Refseq Category na
Seq Rel Date 2015/11/30
Spanned Gaps 3
Species Taxid 287
SSU Count 1
Submitter Synthetic Genomics Vaccines, Inc.
Taxid 287
Total Gap Length 169
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLUF00000000.1