Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers WH-SGI-V-07486
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.76%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 162
N50 Contigs 164,423 bp
Longest Contig 567,781 bp
Scaffold Count 160
N50 Scaffolds 164,423 bp
Longest Scaffold 567,781 bp
Genome Size 6,832,697 bp
Protein Count 6,429
Coding Density 89.53%
GC Percentage 66.04%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name WH-SGI-V-07486
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04128605
Country USA
Date 2015-11-30
Genbank Assembly Accession GCA_001451605.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Hospital
Latitude Longitude None
Molecule Count N/A
CDS Count 6,636
Refseq Category na
Seq Rel Date 2015/11/30
Spanned Gaps 2
Species Taxid 287
SSU Count 2
Submitter Synthetic Genomics Vaccines, Inc.
Taxid 287
Total Gap Length 84
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLPS00000000.1