Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers WH-SGI-V-07392
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.69%
CheckM Strain Heterogeneity 0.0
5S Count 9
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 163
N50 Contigs 198,540 bp
Longest Contig 571,358 bp
Scaffold Count 163
N50 Scaffolds 198,540 bp
Longest Scaffold 571,358 bp
Genome Size 7,021,152 bp
Protein Count 6,589
Coding Density 88.94%
GC Percentage 65.89%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name WH-SGI-V-07392
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04128577
Country France
Date 2015-11-30
Genbank Assembly Accession GCA_001451065.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Hospital
Latitude Longitude None
Molecule Count N/A
CDS Count 6,816
Refseq Category na
Seq Rel Date 2015/11/30
Spanned Gaps 0
Species Taxid 287
SSU Count 1
Submitter Synthetic Genomics Vaccines, Inc.
Taxid 287
Total Gap Length 0
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLOQ00000000.1