Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers WH-SGI-V-07368
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.43%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 106
N50 Contigs 216,401 bp
Longest Contig 413,527 bp
Scaffold Count 105
N50 Scaffolds 233,435 bp
Longest Scaffold 584,522 bp
Genome Size 6,817,892 bp
Protein Count 6,380
Coding Density 89.14%
GC Percentage 65.90%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name WH-SGI-V-07368
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04128553
Country France
Date 2015-11-30
Genbank Assembly Accession GCA_001450115.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Tracheal
Latitude Longitude None
Molecule Count N/A
CDS Count 6,557
Refseq Category na
Seq Rel Date 2015/11/30
Spanned Gaps 1
Species Taxid 287
SSU Count 2
Submitter Synthetic Genomics Vaccines, Inc.
Taxid 287
Total Gap Length 11
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLNS00000000.1