Pseudomonas aeruginosa_A
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa_A
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers WH-SGI-V-07072
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000017205.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.17%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 88
N50 Contigs 242,651 bp
Longest Contig 810,275 bp
Scaffold Count 87
N50 Scaffolds 260,903 bp
Longest Scaffold 810,275 bp
Genome Size 6,373,176 bp
Protein Count 5,878
Coding Density 89.38%
GC Percentage 66.59%
Ambiguous Bases N/A
GTDB representative GCA_000017205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name WH-SGI-V-07072
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04128498
Country USA
Date 2015-11-30
Genbank Assembly Accession GCA_001449385.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Hospital
Latitude Longitude None
Molecule Count N/A
CDS Count 6,033
Refseq Category na
Seq Rel Date 2015/11/30
Spanned Gaps 1
Species Taxid 287
SSU Count 1
Submitter Synthetic Genomics Vaccines, Inc.
Taxid 287
Total Gap Length 37
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLLP00000000.1