Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Virginia; x__Salmonella enterica subsp. enterica serovar Virginia str. SA19971529
NCBI Strain Identifiers SA19971529
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 6
23S Count 9
tRNA Count 20
Contig Count 14
N50 Contigs 533,649 bp
Longest Contig 1,511,208 bp
Scaffold Count 14
N50 Scaffolds 533,649 bp
Longest Scaffold 1,511,208 bp
Genome Size 4,805,769 bp
Protein Count 4,488
Coding Density 87.39%
GC Percentage 52.15%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM144888v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03487301
Country Canada: New Brunswick: Madawaska
Date 2015-11-27
Genbank Assembly Accession GCA_001448885.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source carcass
Latitude Longitude None
Molecule Count N/A
CDS Count 4,780
Refseq Category na
Seq Rel Date 2015/11/27
Spanned Gaps 0
Species Taxid 28901
SSU Count 7
Submitter Laboratory for Foodborne Zoonoses
Taxid 1243594
Total Gap Length 0
Translation Table 11
tRNA Count (total) 80
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LHTI00000000.1