Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Rubislaw; x__Salmonella enterica subsp. enterica serovar Rubislaw str. SA20030553
NCBI Strain Identifiers SA20030553
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.71%
CheckM Contamination 0.89%
CheckM Strain Heterogeneity 25.0
5S Count 7
16S Count 7
23S Count 9
tRNA Count 20
Contig Count 31
N50 Contigs 531,393 bp
Longest Contig 693,514 bp
Scaffold Count 31
N50 Scaffolds 531,393 bp
Longest Scaffold 693,514 bp
Genome Size 4,931,292 bp
Protein Count 4,622
Coding Density 86.80%
GC Percentage 51.92%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM144884v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03470770
Country Canada: Saskatchewan
Date 2015-11-27
Genbank Assembly Accession GCA_001448845.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cecal content
Latitude Longitude None
Molecule Count N/A
CDS Count 4,945
Refseq Category na
Seq Rel Date 2015/11/27
Spanned Gaps 0
Species Taxid 28901
SSU Count 7
Submitter Laboratory for Foodborne Zoonoses
Taxid 1240693
Total Gap Length 0
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LHTG00000000.1