Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Dublin; x__Salmonella enterica subsp. enterica serovar Dublin str. SA20093032
NCBI Strain Identifiers SA20093032
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.71%
CheckM Contamination 0.07%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 8
23S Count 11
tRNA Count 20
Contig Count 13
N50 Contigs 584,059 bp
Longest Contig 1,727,441 bp
Scaffold Count 13
N50 Scaffolds 584,059 bp
Longest Scaffold 1,727,441 bp
Genome Size 4,914,227 bp
Protein Count 4,687
Coding Density 86.98%
GC Percentage 52.10%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM144861v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03468238
Country Canada: British Columbia
Date 2015-11-27
Genbank Assembly Accession GCA_001448615.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source lymph node
Latitude Longitude None
Molecule Count N/A
CDS Count 4,933
Refseq Category na
Seq Rel Date 2015/11/27
Spanned Gaps 0
Species Taxid 28901
SSU Count 8
Submitter Laboratory for Foodborne Zoonoses
Taxid 1242092
Total Gap Length 0
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LHSQ00000000.1