Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Berta; x__Salmonella enterica subsp. enterica serovar Berta str. SA20103550
NCBI Strain Identifiers SA20103550
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.29%
CheckM Strain Heterogeneity 37.5
5S Count 7
16S Count 8
23S Count 13
tRNA Count 20
Contig Count 21
N50 Contigs 739,042 bp
Longest Contig 1,053,940 bp
Scaffold Count 21
N50 Scaffolds 739,042 bp
Longest Scaffold 1,053,940 bp
Genome Size 5,035,367 bp
Protein Count 4,770
Coding Density 87.09%
GC Percentage 52.07%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM144847v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03470706
Country Canada: Ontario
Date 2015-11-27
Genbank Assembly Accession GCA_001448475.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,077
Refseq Category na
Seq Rel Date 2015/11/27
Spanned Gaps 0
Species Taxid 28901
SSU Count 8
Submitter Laboratory for Foodborne Zoonoses
Taxid 1242696
Total Gap Length 0
Translation Table 11
tRNA Count (total) 85
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LHSR00000000.1