Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli str. Deng
NCBI Strain Identifiers Deng
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 98.71%
CheckM Contamination 0.41%
CheckM Strain Heterogeneity 33.33
5S Count 5
16S Count 2
23S Count 1
tRNA Count 19
Contig Count 319
N50 Contigs 97,519 bp
Longest Contig 306,254 bp
Scaffold Count 319
N50 Scaffolds 97,519 bp
Longest Scaffold 306,254 bp
Genome Size 5,171,718 bp
Protein Count 5,233
Coding Density 87.31%
GC Percentage 50.52%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM144740v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04285713
Country China: Shenzhen; Guangdong
Date 2015-11-24
Genbank Assembly Accession GCA_001447405.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces from a 2-year old child with diarrhea
Latitude Longitude 22.5 N 114 E
Molecule Count N/A
CDS Count 5,673
Refseq Category na
Seq Rel Date 2015/11/24
Spanned Gaps 0
Species Taxid 562
SSU Count 3
Submitter The Affiliated Shenzhen Nanshan Hospital of Guangdong Medical College
Taxid 1281747
Total Gap Length 0
Translation Table 11
tRNA Count (total) 107
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AOTC00000000.1