Pseudomonas citronellolis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas citronellolis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas citronellolis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas citronellolis
NCBI Strain Identifiers TTU2014-011ASC
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900112375.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 2.39%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 141
N50 Contigs 121,373 bp
Longest Contig 431,666 bp
Scaffold Count 137
N50 Scaffolds 128,089 bp
Longest Scaffold 431,666 bp
Genome Size 6,639,296 bp
Protein Count 5,891
Coding Density 86.48%
GC Percentage 67.43%
Ambiguous Bases N/A
GTDB representative GCA_900112375.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM144699v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04099648
Country USA: New Mexico
Date 2015-11-19
Genbank Assembly Accession GCA_001446995.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,859
Refseq Category na
Seq Rel Date 2015/11/19
Spanned Gaps 4
Species Taxid 53408
SSU Count 1
Submitter Texas Tech University
Taxid 53408
Total Gap Length 330
Translation Table 11
tRNA Count (total) 60
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKKN00000000.1