Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers TTU2014-121AME
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 8
23S Count 4
tRNA Count 20
Contig Count 184
N50 Contigs 73,762 bp
Longest Contig 190,242 bp
Scaffold Count 184
N50 Scaffolds 73,762 bp
Longest Scaffold 190,242 bp
Genome Size 5,063,529 bp
Protein Count 4,871
Coding Density 87.48%
GC Percentage 50.76%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM144661v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04099655
Country USA: Texas Panhandle
Date 2015-11-19
Genbank Assembly Accession GCA_001446615.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,271
Refseq Category na
Seq Rel Date 2015/11/19
Spanned Gaps 0
Species Taxid 562
SSU Count 12
Submitter Texas Tech University
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKJU00000000.1