Undefined name (Failed Quality Check)
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers AH26_28866
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.22%
CheckM Contamination 1.71%
CheckM Strain Heterogeneity 80.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1,088
N50 Contigs 8,439 bp
Longest Contig 36,951 bp
Scaffold Count 1,088
N50 Scaffolds 8,439 bp
Longest Scaffold 36,951 bp
Genome Size 4,303,839 bp
Protein Count 4,759
Coding Density 90.47%
GC Percentage 65.52%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM144553v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03813779
Country South Africa: KwaZulu-Natal
Date 2015-11-17
Genbank Assembly Accession GCA_001445535.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source clinical isolate
Latitude Longitude None
Molecule Count N/A
CDS Count 4,832
Refseq Category na
Seq Rel Date 2015/11/17
Spanned Gaps 0
Species Taxid 1773
SSU Count 1
Submitter Columbia University Mailman School of Public Health
Taxid 1773
Total Gap Length 0
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKMH00000000.1