Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers 001_13432
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 1.0%
CheckM Strain Heterogeneity 100.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 268
N50 Contigs 44,900 bp
Longest Contig 135,812 bp
Scaffold Count 266
N50 Scaffolds 44,960 bp
Longest Scaffold 135,812 bp
Genome Size 4,405,690 bp
Protein Count 4,292
Coding Density 90.38%
GC Percentage 65.51%
Ambiguous Bases 34
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM144517v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03813776
Country USA: New York City
Date 2015-11-17
Genbank Assembly Accession GCA_001445175.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source clinical isolate
Latitude Longitude None
Molecule Count N/A
CDS Count 4,431
Refseq Category na
Seq Rel Date 2015/11/17
Spanned Gaps 2
Species Taxid 1773
SSU Count 1
Submitter Columbia University Mailman School of Public Health
Taxid 1773
Total Gap Length 78
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKDO00000000.1