Clostridium_F botulinum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium_F; s__Clostridium_F botulinum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium sporogenes
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium sporogenes
NCBI Strain Identifiers FDA;PA 3679
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001276985.1)
Genome Characteristics
CheckM Completeness 99.31%
CheckM Contamination 0.69%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 4
23S Count 36
tRNA Count 20
Contig Count 86
N50 Contigs 151,708 bp
Longest Contig 306,291 bp
Scaffold Count 86
N50 Scaffolds 151,708 bp
Longest Scaffold 306,291 bp
Genome Size 4,021,963 bp
Protein Count 3,738
Coding Density 80.67%
GC Percentage 28.28%
Ambiguous Bases N/A
GTDB representative GCA_001276985.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM144465v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03418523
Country USA
Date 2015-11-17
Genbank Assembly Accession GCA_001444655.1
Genome Category Isolate
Genome Representation full
Isolate FDA
Isolation Source isolate obtained from the FDA
Latitude Longitude None
Molecule Count N/A
CDS Count 3,743
Refseq Category na
Seq Rel Date 2015/11/17
Spanned Gaps 0
Species Taxid 1509
SSU Count 6
Submitter Illinois Institute of Technology
Taxid 1509
Total Gap Length 0
Translation Table 11
tRNA Count (total) 92
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJTA00000000.1