Clostridium_F sporogenes
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium_F; s__Clostridium_F sporogenes
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium sporogenes
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium sporogenes
NCBI Strain Identifiers 1961-2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001020205.1)
Genome Characteristics
CheckM Completeness 99.31%
CheckM Contamination 1.38%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 10
23S Count 2
tRNA Count 20
Contig Count 38
N50 Contigs 213,496 bp
Longest Contig 811,657 bp
Scaffold Count 38
N50 Scaffolds 213,496 bp
Longest Scaffold 811,657 bp
Genome Size 4,092,659 bp
Protein Count 3,803
Coding Density 82.68%
GC Percentage 27.91%
Ambiguous Bases N/A
GTDB representative GCA_001020205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM144458v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03418528
Country USA
Date 2017-4-3
Genbank Assembly Accession GCA_001444585.2
Genome Category Isolate
Genome Representation full
Isolate 1961-2
Isolation Source isolate obtained from ATCC:7955 NCA 3679 preserved in 1961
Latitude Longitude None
Molecule Count N/A
CDS Count 3,825
Refseq Category na
Seq Rel Date 2017/04/03
Spanned Gaps 0
Species Taxid 1509
SSU Count 10
Submitter Illinois Institute of Technology
Taxid 1509
Total Gap Length 0
Translation Table 11
tRNA Count (total) 64
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLZW00000000.2