Clostridium_F sporogenes
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium_F; s__Clostridium_F sporogenes
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium sporogenes
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium sporogenes
NCBI Strain Identifiers 1990
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001020205.1)
Genome Characteristics
CheckM Completeness 99.31%
CheckM Contamination 1.38%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 3
23S Count 2
tRNA Count 20
Contig Count 59
N50 Contigs 187,341 bp
Longest Contig 545,953 bp
Scaffold Count 59
N50 Scaffolds 187,341 bp
Longest Scaffold 545,953 bp
Genome Size 4,163,429 bp
Protein Count 3,896
Coding Density 82.72%
GC Percentage 27.85%
Ambiguous Bases 16
GTDB representative GCA_001020205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM144457v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03418526
Country USA
Date 2015-11-17
Genbank Assembly Accession GCA_001444575.1
Genome Category Isolate
Genome Representation full
Isolate 1990
Isolation Source isolate obtained from ATCC:7955 NCA 3679 produced in 1990
Latitude Longitude None
Molecule Count N/A
CDS Count 3,910
Refseq Category na
Seq Rel Date 2015/11/17
Spanned Gaps 0
Species Taxid 1509
SSU Count 3
Submitter Illinois Institute of Technology
Taxid 1509
Total Gap Length 0
Translation Table 11
tRNA Count (total) 60
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLZV00000000.1