Endoriftia persephone
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Chromatiales; f__Sedimenticolaceae; g__Endoriftia; s__Endoriftia persephone
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__; f__; g__; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; x__unclassified Gammaproteobacteria; x__sulfur-oxidizing symbionts; s__endosymbiont of Ridgeia piscesae
NCBI Strain Identifiers ind11
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000168735.1)
Genome Characteristics
CheckM Completeness 98.54%
CheckM Contamination 0.7%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 97
N50 Contigs 83,967 bp
Longest Contig 236,298 bp
Scaffold Count 86
N50 Scaffolds 98,883 bp
Longest Scaffold 258,673 bp
Genome Size 3,442,017 bp
Protein Count 3,161
Coding Density 89.21%
GC Percentage 58.88%
Ambiguous Bases N/A
GTDB representative GCA_000168735.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM144366v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03657162
Country Pacific Ocean
Date 2015-11-13
Genbank Assembly Accession GCA_001443665.1
Genome Category Isolate
Genome Representation full
Isolate ind11
Isolation Source trophosome of an individual (short-fat morphotype) collected from the Hulk vent in the Main Endeavour Field (-2190 m)
Latitude Longitude 47.95 N 129.1 W
Molecule Count N/A
CDS Count 3,103
Refseq Category na
Seq Rel Date 2015/11/13
Spanned Gaps 11
Species Taxid 54398
SSU Count 1
Submitter University of Victoria
Taxid 54398
Total Gap Length 1100
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LDXT00000000.1