Leptospira interrogans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Leptospirae; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans; x__Leptospira interrogans serovar Hardjo; x__Leptospira interrogans serovar Hardjo-prajitno
NCBI Strain Identifiers Hardjoprajitno
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900156205.1)
Genome Characteristics
CheckM Completeness 95.29%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 66
N50 Contigs 174,697 bp
Longest Contig 307,418 bp
Scaffold Count 2
N50 Scaffolds 4,339,653 bp
Longest Scaffold 4,339,653 bp
Genome Size 4,692,322 bp
Protein Count 3,783
Coding Density 74.85%
GC Percentage 35.00%
Ambiguous Bases 9
GTDB representative GCA_900156205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Chromosome
Assembly Name ASM144330v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04102139
Country Indonesia
Date 2015-11-13
Genbank Assembly Accession GCA_001443305.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source kidney
Latitude Longitude 0.789275 S 113.92132700000002 E
Molecule Count 2
CDS Count 4,159
Refseq Category na
Seq Rel Date 2015/11/13
Spanned Gaps 65
Species Taxid 173
SSU Count 1
Submitter INDICASAT-AIP
Taxid 38347
Total Gap Length 29590
Translation Table 11
tRNA Count (total) 37
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None