Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers TBR-152
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 114
N50 Contigs 81,320 bp
Longest Contig 248,756 bp
Scaffold Count 114
N50 Scaffolds 81,320 bp
Longest Scaffold 248,756 bp
Genome Size 4,303,775 bp
Protein Count 4,167
Coding Density 90.24%
GC Percentage 65.38%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name xdr1v01
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02819975
Country Colombia: Medellin
Date 2015-11-13
Genbank Assembly Accession GCA_001443105.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 4,318
Refseq Category na
Seq Rel Date 2015/11/13
Spanned Gaps 0
Species Taxid 1773
SSU Count 1
Submitter Corporacion para Investigaciones Biologicas and J Craig Venter Institute
Taxid 1773
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRJQ00000000.1