Pedobacter ginsenosidimutans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Sphingobacteriales; f__Sphingobacteriaceae; g__Pedobacter; s__Pedobacter ginsenosidimutans
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Sphingobacteriia; o__Sphingobacteriales; f__Sphingobacteriaceae; g__Pedobacter; s__Pedobacter ginsenosidimutans
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Sphingobacteriia; o__Sphingobacteriales; f__Sphingobacteriaceae; g__Pedobacter; s__Pedobacter ginsenosidimutans
NCBI Strain Identifiers KACC 14530
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 97.61%
CheckM Contamination 0.96%
CheckM Strain Heterogeneity 50.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 86
N50 Contigs 263,945 bp
Longest Contig 678,011 bp
Scaffold Count 86
N50 Scaffolds 263,945 bp
Longest Scaffold 678,011 bp
Genome Size 6,517,553 bp
Protein Count 5,462
Coding Density 87.49%
GC Percentage 38.68%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM144262v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04244546
Country South Korea: Pocheon
Date 2015-11-12
Genbank Assembly Accession GCA_001442625.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil
Latitude Longitude None
Molecule Count N/A
CDS Count 5,392
Refseq Category na
Seq Rel Date 2015/11/12
Spanned Gaps 0
Species Taxid 687842
SSU Count 1
Submitter GCAT-SEEK
Taxid 687842
Total Gap Length 0
Translation Table 11
tRNA Count (total) 50
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LMZQ00000000.1