Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers YD786
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 1
N50 Contigs 4,863,501 bp
Longest Contig 4,863,501 bp
Scaffold Count 1
N50 Scaffolds 4,863,501 bp
Longest Scaffold 4,863,501 bp
Genome Size 4,863,501 bp
Protein Count 4,544
Coding Density 87.62%
GC Percentage 50.56%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM144249v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04227566
Country USA
Date 2015-11-10
Genbank Assembly Accession GCA_001442495.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urine
Latitude Longitude None
Molecule Count 1
CDS Count 4,898
Refseq Category na
Seq Rel Date 2015/11/10
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter Huashan Hospital, Fudan University
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 87
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None