Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
NCBI Strain Identifiers CVM N8133
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000254135.2)
Genome Characteristics
CheckM Completeness 99.23%
CheckM Contamination 1.29%
CheckM Strain Heterogeneity 44.44
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 162
N50 Contigs 70,651 bp
Longest Contig 215,589 bp
Scaffold Count 162
N50 Scaffolds 70,651 bp
Longest Scaffold 215,589 bp
Genome Size 1,935,282 bp
Protein Count 2,141
Coding Density 93.26%
GC Percentage 30.88%
Ambiguous Bases N/A
GTDB representative GCA_000254135.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Campylobacter coli CVM N8133 v1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02693041
Country USA:CT
Date 2015-11-10
Genbank Assembly Accession GCA_001441955.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Ground Turkey
Latitude Longitude None
Molecule Count N/A
CDS Count 2,072
Refseq Category na
Seq Rel Date 2015/11/10
Spanned Gaps 0
Species Taxid 195
SSU Count 1
Submitter FDA
Taxid 195
Total Gap Length 0
Translation Table 11
tRNA Count (total) 40
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JOVB00000000.1