Roseovarius indicus
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Roseovarius; s__Roseovarius indicus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Roseovarius; s__Roseovarius indicus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Roseovarius; s__Roseovarius indicus
NCBI Strain Identifiers B108
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.1%
CheckM Contamination 2.1%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 122
N50 Contigs 200,007 bp
Longest Contig 675,683 bp
Scaffold Count 122
N50 Scaffolds 200,007 bp
Longest Scaffold 675,683 bp
Genome Size 6,063,628 bp
Protein Count 5,899
Coding Density 90.35%
GC Percentage 64.38%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM144163v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03481072
Country Indian Ocean
Date 2015-11-9
Genbank Assembly Accession GCA_001441635.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source deep sea water
Latitude Longitude None
Molecule Count N/A
CDS Count 5,874
Refseq Category representative genome
Seq Rel Date 2015/11/09
Spanned Gaps 0
Species Taxid 540747
SSU Count 1
Submitter Third Institute of Oceanography
Taxid 540747
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LAXI00000000.1