Roseovarius atlanticus
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Roseovarius; s__Roseovarius atlanticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Roseovarius; s__Roseovarius atlanticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Roseovarius; s__Roseovarius atlanticus
NCBI Strain Identifiers R12B
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.45%
CheckM Contamination 1.36%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 73
N50 Contigs 202,657 bp
Longest Contig 638,860 bp
Scaffold Count 73
N50 Scaffolds 202,657 bp
Longest Scaffold 638,860 bp
Genome Size 4,578,348 bp
Protein Count 4,521
Coding Density 89.59%
GC Percentage 63.58%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM144161v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03480902
Country Atlantic Ocean
Date 2015-11-9
Genbank Assembly Accession GCA_001441615.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source seawater
Latitude Longitude None
Molecule Count N/A
CDS Count 4,466
Refseq Category representative genome
Seq Rel Date 2015/11/09
Spanned Gaps 0
Species Taxid 1641875
SSU Count 1
Submitter Third Institute of Oceanography
Taxid 1641875
Total Gap Length 0
Translation Table 11
tRNA Count (total) 42
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LAXJ00000000.1