Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli VL2874
NCBI Strain Identifiers VL2874
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 126
N50 Contigs 88,833 bp
Longest Contig 229,894 bp
Scaffold Count 126
N50 Scaffolds 88,833 bp
Longest Scaffold 229,894 bp
Genome Size 4,784,284 bp
Protein Count 4,596
Coding Density 87.72%
GC Percentage 50.54%
Ambiguous Bases 2
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM144133v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03782457
Country Israel
Date 2015-11-9
Genbank Assembly Accession GCA_001441335.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source milk from cow with acute mastitis
Latitude Longitude None
Molecule Count N/A
CDS Count 4,890
Refseq Category na
Seq Rel Date 2015/11/09
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter Kimron Veterinary Institute
Taxid 1173689
Total Gap Length 0
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JTFE00000000.1