Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 35402
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.85%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 302
N50 Contigs 57,799 bp
Longest Contig 247,300 bp
Scaffold Count 301
N50 Scaffolds 57,799 bp
Longest Scaffold 247,300 bp
Genome Size 5,076,744 bp
Protein Count 5,075
Coding Density 87.68%
GC Percentage 50.46%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM144080v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04103129
Country Belgium
Date 2015-11-06
Genbank Assembly Accession GCA_001440805.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces
Latitude Longitude 50.369007159612536 N 5.180273652076721 E
Molecule Count N/A
CDS Count 5,445
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 1
Species Taxid 562
SSU Count 1
Submitter University of Liege
Taxid 562
Total Gap Length 46
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKDH00000000.1