Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers EH1332
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.82%
CheckM Contamination 0.53%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 15
Contig Count 300
N50 Contigs 53,835 bp
Longest Contig 214,852 bp
Scaffold Count 300
N50 Scaffolds 53,835 bp
Longest Scaffold 214,852 bp
Genome Size 4,950,091 bp
Protein Count 4,901
Coding Density 87.73%
GC Percentage 50.43%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM144068v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04100673
Country Belgium
Date 2015-11-6
Genbank Assembly Accession GCA_001440685.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,257
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter University of Liege
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKPL00000000.1