Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers ECO5_174
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 14
Contig Count 395
N50 Contigs 50,560 bp
Longest Contig 156,817 bp
Scaffold Count 381
N50 Scaffolds 53,270 bp
Longest Scaffold 156,817 bp
Genome Size 5,048,292 bp
Protein Count 5,059
Coding Density 87.78%
GC Percentage 50.41%
Ambiguous Bases 6
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM144064v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04100286
Country Belgium
Date 2015-11-6
Genbank Assembly Accession GCA_001440645.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,405
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 14
Species Taxid 562
SSU Count 1
Submitter University of Liege
Taxid 562
Total Gap Length 1877
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKDD00000000.1