Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers ECO_097
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 2
23S Count 1
tRNA Count 16
Contig Count 380
N50 Contigs 47,063 bp
Longest Contig 253,733 bp
Scaffold Count 368
N50 Scaffolds 52,265 bp
Longest Scaffold 253,733 bp
Genome Size 4,987,027 bp
Protein Count 4,971
Coding Density 87.70%
GC Percentage 50.44%
Ambiguous Bases 5
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM144059v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04100279
Country Belgium
Date 2015-11-6
Genbank Assembly Accession GCA_001440595.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,308
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 12
Species Taxid 562
SSU Count 2
Submitter University of Liege
Taxid 562
Total Gap Length 1481
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKDB00000000.1